PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05272g02010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 202aa    MW: 21864 Da    PI: 7.1735
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05272g02010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.61.5e-391878262
                    zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                              ++++lkcprCds ntkfCyynny+lsqPr+fCk+C+ryWtkGG+lrn+PvGg++rkn k+s
  Niben101Scf05272g02010.1 18 EQEILKCPRCDSINTKFCYYNNYNLSQPRHFCKNCKRYWTKGGTLRNIPVGGASRKNTKRS 78
                              57899****************************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-251470IPR003851Zinc finger, Dof-type
PfamPF027011.1E-332076IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.8072276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MNMQDPSVYS EINPQFPEQE ILKCPRCDSI NTKFCYYNNY NLSQPRHFCK NCKRYWTKGG  60
TLRNIPVGGA SRKNTKRSSS SNSKRSSTTS SLSSSSAAQP KSEPFPLPVV AVIDQNSPIH  120
GPFSSLLTST GPEIGSLFEG LKPNVSDSGL VSGSDAAAQS ENNNNTDEYL CPVQSGEDSN  180
CWNGGNGWTD LAIYSAPGSS FQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016453403.11e-110PREDICTED: dof zinc finger protein DOF3.1-like
TrEMBLA0A0V0HDG75e-86A0A0V0HDG7_SOLCH; Putative dof zinc finger protein DOF3.1-like
STRINGSolyc06g062520.1.12e-78(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.13e-35DOF zinc finger protein 1